![]() In particular, these changes included a touch-optimized Windows shell and start screen based on Microsoft's Metro design language, integration with online services, the Windows Store, and a new keyboard shortcut for screenshots. Windows 8 introduced major changes to the operating system's platform and user interface intended to improve its user experience on tablets, where Windows was now competing with mobile operating systems, including Android and iOS. It was released to manufacturing on Augit was subsequently made available for download via MSDN and TechNet on August 15, 2012, and later to retail on October 26, 2012. ![]() This makes one heme spacefilling, in cpk colors (oxygen is red, nitrogen is blue, carbon is gray)ģ6.Windows 8 is a major release of the Windows NT operating system developed by Microsoft. The basic idea is to "select" the protein, or some of its amino acids, or some of its atoms. Next time we will learn how to change details of the image of the molecule. You can even drag and drop the file onto the jmol window.ģ1. You can type "load pdb_files/1xme2.jpg" or "load 1xme2.jpg" (depending upon where the file is stored). This will function as a normal jpg file, but it also serves as a script file. Zoom them a couple times and you can see that the first image will become jagged.ģ0. To get a better quality image you can designate the size. For example, a better quality image can be saved.Ģ8. At the right, change the Image Type to PNG.Ģ7. AN image file can be created under the File menu, choose "Export", then "Export Image". You can also save an image file, such as in "jpg" or "png" format, which is more useful for general purposes.Ģ6. If the screen is white, you know you are successful.Ģ5. When you hit return the molecule should reappear. To bring the molecule back, type in the console: "script jmol_pages/1xme_1.spt"Ģ4. When you hit return the molecule should disappear, screen is now black.Ģ3. When doing a project it is helpful to name your files systematically, so you can tell what they are. This works because the jmol_pages folder is in the jmol folder.Ģ1. This creates a file called "1xme_1.spt" in the "jmol_pages" folder. Type: "write script jmol_pages/1xme_1.spt"Ģ0. We must save a new file called a script file.ġ9. I tend to prefer the white background in any case.)ġ8. (This is important if you want to print the image of your molecule. When you hit enter/return, the black should turn to white. In the Script window, type: "background white" (after typing commands you must hit the enter key"ġ7. To reload in a different way, type "zap" to clear the screen.ġ6. Or to use your downloaded file, type "load pdb_files/". Note: You can also load a molecule directly from the PDB, from the "File" menu, Get PDB, then type "1xme". Now you should see the protein appear in the window, probably in a "ball-and-stick" rendering with CPK colors and a black background. Look for the "pdb_files" folder and open it.ġ4. One way: at the upper left, under the Jmol "File" menu, click "Open"ġ3. Move this window to the upper right of your screen, and make it more narrow, if necessary, so that you can see both windows at the same time. Go to the "File" menu at the upper left of the Jmol window, and click on "Console". Probably you should expand it to the bottom of your screen.ġ1. You can make the window larger or smaller by dragging the lower right corner. Drag the window to the left side of your screen, if necessary. (On a Mac hold the "control" key down while opening.)ġ0. Find the file "Jmol.jar" file in the jmol folder. Move the new "jsmol" folder into the "jmol_pages" folder (look for the jsmol.htm page in the jsmol folder and open it in Firefox to explore jmol capabilities)ĩ. Find the jsmol.zip file, and expand it into a folder by double-clicking it.Ĩ. Find the "" file (or download again) and copy or move it to the "pdb_files" folder.ħ. Open the "jmol" folder and make new folders called "pdb_files" and "jmol_pages"Ħ. ![]() In any case I will refer to it as the "jmol" folder.ĥ. (Desktop, Applications folder, etc) or leave it in the Downloads folderĤ. You may move the folder to a convenient place. Double-click it to expand the file, into a folder. Look for this file, wherever your downloads appear: Jmol-14.29.3-binary.zipģ. ![]()
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